Newly assembled long noncoding RNAs in GTF format (example). If this input is empty, long noncoding RNAs in RefSeq will be used as input.
Expressed microRNAs in your biological system (example).
Gene expression matrix from RNA-seq data analysis (>3 samples/stages). Start from the second column, each column represents a gene expression profile from one stage (example).
TF binding peaks should be in BED format and lncFunTK requires >3 TFs binding profiles (example).
AGO2 CLIP-seq binding peaks in BED format (example).